rs51147317 SNP Detail

Summary

• ID
  rs51147317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127203663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACACCC ACATTTTATA
  TGGTGCTGGG GTTCAGAACT CAGCCATTCA TCCTTGTGCA GCCAGGGCCT TCCACTGAGC
  CTCCTCAGTC CCTTCTTATC TTTGTCCCTT TGAGACAAGG TTTTACCTTG TAGCCCAGGC
  AAGTCCCCAA CTCACAGCAA CCTCCATGCC TCAATCTTCG TATTCCTGGG GTTACAAATA
  Y
  GAGCCACCAC AGATGGCTTT AAATTGGAAC GCTGTTAGGT AAACCATGTT TTATTCTAAT
  TTCATTATGG TATATTGTAA TGAGTACAAA ATTTAAGGTA AGAAAATTCA AAGTCACTAA
  GGGTTTGTTG TTGCTGCTGT TGCTGTTTCA TTTTGTTTGT TTGTTTGTTT GCAAGACAGG
  GGTCTCTCTG GGTAGCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135862692	ENSMUSSNP101957	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320953871	CHEV_3_127112932	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51147317					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127203663 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	1099 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	1058 bp distal
Rr584774	regulatory region 584774	465 bp distal
Tssr35571	transcription start site region 35571	1127 bp upstream
Tssr35572	transcription start site region 35572	1033 bp upstream
Tssr35573	transcription start site region 35573	1006 bp upstream
Tssr35574	transcription start site region 35574	971 bp upstream
Tssr35575	transcription start site region 35575	950 bp upstream