rs51150538 SNP Detail

Summary

• ID
  rs51150538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99510617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG ATGTCCGCTG ATAGAGATGT
  Y
  TGGGAATTTG GAATAAGGCA GGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132712425	ENSMUSSNP1749708	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323829003	CHEV_11_99481105	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51150538					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99510617 () rs orientation: forward

Symbol	Name	Function Class
Gm32730	predicted gene, 32730	within coordinates
Krtap2-20	keratin associated protein 2-20	within coordinates
Tssr104883	transcription start site region 104883	1181 bp upstream
Tssr110694	transcription start site region 110694	641 bp downstream
Tssr110695	transcription start site region 110695	1126 bp downstream