rs51151726 SNP Detail

Summary

• ID
  rs51151726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134293917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCTGGT GTGTCTGAAG
  TCAGCTACAG TGCACTCACA TATAATAAAT AAATCTTAAA AAAAAAAAAA AAAGCATAAG
  CTAAGGCCTG AACACAAGGT GGGAGGAAAA TATGAAACAT TTAGCAAGTT TATTACATTT
  TAACTCTATG AAGAGCTCAG CCACAGTTAA GGGACCAGGG GGGCTGAAGG CATGACACAA
  Y
  GGTCAAACAC TGTTGCTCCT GCAGAGCTTC AGTCCCAGGA TGCACTGCAG TTTACAGCCA
  CCTCCACACA AGGCGCACAG AACCTACGTG GATGCACCCT GAACACTCAT ACATCTAATA
  GAAAATAAAT GGTTTTTAGA AAAGTCTCCA AGAGCCAAGA TCAACAGAGT GTAGATCTGT
  GAGTATGCAT CCGAGCTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60846278	NES16011334	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51151726					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846278	NES16011334	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134293917 () rs orientation: forward

Symbol	Name	Function Class
Gtf2i	general transcription factor II I	within coordinates
Tssr53619	transcription start site region 53619	630 bp upstream
Tssr53620	transcription start site region 53620	1014 bp downstream
Tssr53621	transcription start site region 53621	1521 bp downstream