rs51152388 SNP Detail

Summary

• ID
  rs51152388
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:83106041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTCTCTGA CCTCTCAAAT GCTTGTAAAG GCTGGCATTT
  CCTTCTCCAA TAACATGCTC GTTTTCTTAA ACCTTGAGTG TAAACAACAG CACCTTGCTT
  K
  TCATGGCCTA TTTATTGTTT GTCACATTAT ATTGCATTAT TATTACATTG TTGCATGATA
  CAATTCTTAA AGTTTGCTTA CTTGGCCTCC TGTAGGCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145303867	ENSMUSSNP505200	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322735865	CHEV_8_84903311	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51152388					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83106041 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il15	interleukin 15			Intron
				Noncoding-Transcript-Variant
Tssr81957	transcription start site region 81957			347 bp upstream
Tssr81958	transcription start site region 81958			331 bp upstream
Tssr81959	transcription start site region 81959			668 bp downstream
Tssr81960	transcription start site region 81960			853 bp downstream
Tssr81961	transcription start site region 81961			889 bp downstream