rs51152797 SNP Detail

Summary

• ID
  rs51152797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14065822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATAGTCA TAGCATGAGG
  TATATGGAGC CTGTTGGATG TACTCAGGCA TGTGTACAGG TTTACAGCTG AGGAGGAGTT
  AGGCAGAACA GTGTTCAGGC ATCTTTCCTC AGCACTGGGG CTCTGAGCCA TCTTCTGAAG
  ACATCTATCG CAGAACTAGA CTTAGCCTTC TAATTCATTT GTTCCTGAGT ACCTAGAGAC
  R
  TATAAACAGT AGCACAGTAA GTACTTAGCT AGTTCTTAGA AATGTTTCCA GTTATTTAAA
  TTTTTGATAA TTCCTTATAG GTAAAGTGAT AGCATCTGAT ATTTATGTGA CCTTGAGGAA
  GATGAGCAGA TAGAATGACC ATTTTTTGTT GTTGTTGTTG TTGTTGTCTT TGTTTTTTAA
  AGCATGCTTT ATTGTGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60543079	NES16555069	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51152797					SNP	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60543079	NES16555069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14065822 () rs orientation: forward

Symbol	Name	Function Class
Afdn	afadin, adherens junction formation factor	within coordinates
Tssr142714	transcription start site region 142714	528 bp upstream
Tssr142715	transcription start site region 142715	535 bp upstream
Tssr142716	transcription start site region 142716	593 bp upstream
Tssr142717	transcription start site region 142717	612 bp upstream
Tssr142718	transcription start site region 142718	631 bp upstream
Tssr142719	transcription start site region 142719	1197 bp upstream