rs51154480 SNP Detail

Summary

• ID
  rs51154480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171285581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAC GTTATAGTAT TAGAAGTAAT
  Y
  TATAGAATCA GTGAGTTTTG ACTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss119999053	PARCsnp_1.13604	PARC_SEQ	INBRED	f	SNP			T	C
ss120001158	PARCsnp_1.02847	PARC_SEQ	INBRED	f	SNP			T	C
ss146163776	ENSMUSSNP5339090	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C		T
ss320119028	CHEV_1_173388144	CHEVERUD	SCREENING_POP	f	SNP					C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51154480					SNP	C	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171285581 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr25638	regulatory region 25638	65 bp distal
Rr31965	regulatory region 31965	1621 bp proximal
Tssr10057	transcription start site region 10057	92 bp upstream
Tssr10058	transcription start site region 10058	320 bp upstream