rs51156126 SNP Detail

Summary

• ID
  rs51156126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44466376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGGGGC CCGGGCTCGG
  TCTCCTGAAT CGGTCAGATC CGATGTGTCT TTCACACCCG AAACCAGCTC GTCTCGTTCT
  CTCTCCCTGC TTCACGAATT TGCCACCCGA GACCTCGTGG GTTAAGCCCA TCGCCGAATG
  GCGCAAGCTA GCTTAGGCTT CATAGAGGAG TTCCAGGCAG CAACCGCGAG ATAACGCTTC
  Y
  CAAGTACTTG TAGAGCGCTG TATACGCGCA CAGATATATC AGCTATGGAA AGTAGGCCAC
  GAAGTCCTAA CCACGAGACT CTTCAACATA TTTTTGTTTG TTTTGTTTTA ACATTTATTG
  TGGTGGTCAG AGGAGAGCTA GCAGGAGTTG GTTCTCTGAC CATGTGAGTC CCAGGGACGG
  AACTCGGGTC AAACTATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149123049	ENSMUSSNP715133	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51156126					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44466376 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	294 bp upstream
Cpgi18994	CpG island 18994	within coordinates
Il4i1b	interleukin 4 induced 1B	within coordinates
Nup62	nucleoporin 62	within coordinates
Rr400297	regulatory region 400297	879 bp downstream
Tssr66426	transcription start site region 66426	1012 bp downstream
Tssr66427	transcription start site region 66427	644 bp downstream
Tssr66428	transcription start site region 66428	618 bp downstream
Tssr66429	transcription start site region 66429	577 bp downstream
Tssr66430	transcription start site region 66430	546 bp downstream
Tssr72230	transcription start site region 72230	1295 bp upstream
Tssr72231	transcription start site region 72231	1270 bp upstream
Tssr72232	transcription start site region 72232	1026 bp upstream
Tssr72233	transcription start site region 72233	344 bp upstream
Tssr72234	transcription start site region 72234	2 bp downstream