rs51156338 SNP Detail

Summary

• ID
  rs51156338
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79661424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTCTAC AGAATGAGTT
  CCAGGACAGC CAGGGCTACA CAGAGAAACC CTGTCTCGAA AAACCAAAAA AAAAAAAAAA
  AAAAAAAAAA AAAAAAAACC AAAAAAAAAA ACAGAAGTTT GTTGTGTGAT CTGCAGTCAG
  GTATAGTTGG ATCCAGGAGC TTTGATGTTT TTGGAAGATT CCATGTTGGG TTTGGGATTG
  M
  TGTCAAGAAG CCTTGCTTGT CCCCAGGGCT CCTGCAGCTC CTGCAGCCCC CTGACAATGT
  CCCTGTCCCC AGGTGGCCTG ACACGGTCTC TTTCTCCTCC TTAAGTGAGC CTGGAGGCCT
  CCAACCCACA GAAGGAAGGT CACACACAAG ACCCTTTGAG ATGGATCGAG TGACCAGATA
  CCCCATCTTC AGCAACCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386543	NES15268616	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51156338					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386543	NES15268616	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79661424 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Rr216663	regulatory region 216663	377 bp proximal
Rr225117	regulatory region 225117	1023 bp distal
Rr228949	regulatory region 228949	1177 bp proximal
Tssr94404	transcription start site region 94404	972 bp downstream
Tssr94405	transcription start site region 94405	895 bp downstream
Tssr94406	transcription start site region 94406	870 bp downstream
Tssr94407	transcription start site region 94407	416 bp upstream
Tssr94408	transcription start site region 94408	528 bp upstream
Tssr94409	transcription start site region 94409	724 bp upstream