rs51158925 SNP Detail

Summary

• ID
  rs51158925
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106106397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAGGCACC CTTGGTACAC CTGGCTGCAC TGACTGTGAA
  CTGTAGACCA AACAGAGTAT TCAGCAGGGT AGACTTCCCT GAGCTCTGCA GGCCAAGGAC
  W
  GAGAGAACAA ACAGCCTTTT GTCTCCAACT TTCTCTGTGA TCTTGTCAAA AATAGCTGCT
  ACCCACCTTA GAGGCACATA TGAAGCATCC CCATCCATC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145614887	ENSMUSSNP5197071	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322371927	CHEV_7_113650704	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51158925					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106106397 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74131	transcription start site region 74131	1975 bp upstream
Tssr74132	transcription start site region 74132	1799 bp upstream
Tssr74133	transcription start site region 74133	1142 bp upstream
Tssr74134	transcription start site region 74134	887 bp upstream
Tssr74135	transcription start site region 74135	807 bp upstream
Tssr74136	transcription start site region 74136	761 bp upstream
Tssr74137	transcription start site region 74137	695 bp upstream
Tssr74138	transcription start site region 74138	657 bp upstream
Tssr74139	transcription start site region 74139	615 bp upstream
Tssr74140	transcription start site region 74140	562 bp upstream
Tssr74141	transcription start site region 74141	172 bp upstream
Tssr74142	transcription start site region 74142	18 bp upstream