rs51158969 SNP Detail

Summary

• ID
  rs51158969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30259466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTATATTTT AGTATTGCCA CTAAACCTAT TTCCAGCTCC
  TAAGTAACTA TCATAGTCAC TGACATCCTT CACAGGAAGA TCATTCTGGA GACGGACTGG
  R
  TCCTTTCTGA CAGAGAGCTC GCTAGGTGTA TTTCTCAGCT AACTCTCTTT CATTTAAATA
  CTAAAAGCGC TGGGTACTCA TCCACATAGT GAGGACGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990764	NES16136531	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A	A		A	A	G	A		A
ss322135269	CHEV_7_31345060	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51158969					SNP	A	A	A	A	G	A	G	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990764	NES16136531	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30259466 () rs orientation: forward

Symbol	Name	Function Class
Lin37	lin-37 DREAM MuvB core complex component	203 bp upstream
Psenen	presenilin enhancer gamma secretase subunit	1824 bp downstream
Rr400243	regulatory region 400243	145 bp downstream
Tssr71791	transcription start site region 71791	1294 bp upstream
Tssr71792	transcription start site region 71792	1256 bp upstream
Tssr71793	transcription start site region 71793	510 bp upstream
Tssr71794	transcription start site region 71794	389 bp upstream
Tssr71795	transcription start site region 71795	199 bp upstream