rs51159450 SNP Detail

Summary

• ID
  rs51159450
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79327938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT GCCCTCCATT TCAGGACTTG
  T
  AGCCTCTCCC AGGCCCACAC CCTCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148199934	ENSMUSSNP7211018	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325027495	CHEV_15_79274167	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51159450					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79327938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7334	CpG island 7334	1101 bp distal
Csnk1e	casein kinase 1, epsilon	within coordinates
Rr505648	regulatory region 505648	1931 bp distal
Rr505649	regulatory region 505649	1245 bp distal
Tssr135345	transcription start site region 135345	1878 bp upstream
Tssr135346	transcription start site region 135346	1672 bp upstream
Tssr135347	transcription start site region 135347	1631 bp upstream
Tssr135348	transcription start site region 135348	1613 bp upstream