rs51159681 SNP Detail

Summary

• ID
  rs51159681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156958858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGTTGG CCAGGAACTT
  GCTATATAGA CAAGGCTGGC CTTGAACTCA CAGAGATCCA CCTGTCTCTG CCTTCTGAGT
  GCTGGAATTA AAGGGGTGCA TCATCACGCC CTGTCACAAA CAACTTTTAT TAGTCTTTAA
  AATGCACAAC GGGAGGAGTC TCACTGAAGC GCTCTCAGAT TCTCTCTTAC TGACCCCCCC
  R
  CTCTACACCA CCATTATATA CCAGTTTATT ATTCCATAAA TACAATGAAT AACACTTTAT
  AAAATATAAT AATTCACATT ACCAAGGAGA TTATTACCAG ATCATATCGG TAGAATGACT
  ATCATTCTAA AATTTAGGGT TTTTTTCCCC CCATCAACAG AACATTTGAA GTGATAAGCT
  GTTTGTTAGT GCTTCCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148092293	ENSMUSSNP2096262	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51159681					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156958858 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1978 bp distal
Rr568436	regulatory region 568436	16 bp proximal
Rr568437	regulatory region 568437	189 bp proximal
Rr568438	regulatory region 568438	590 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron