rs51160841 SNP Detail

Summary

• ID
  rs51160841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32427498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTGTGG AAGAACCAGC
  AGTGAAATAT AAAGATCTCT AGATTAGGGA CATAAAGCTC TATAGCAGCA ACCCTGCTGT
  TAGCAAGCTG TCTTAATAAA CTCCTGTGGG TCTAAACTGC CCTCATCTGT GCGACAAGAA
  GACTGAACCA GGTGTGTCTC AGCTCAAATA TTTAAAGGAA CTATTTTAAC TGTATGCAGA
  Y
  CACAAAAATT TGGCATTGCA TTCATTGTGT GCTGCAAAAT AAGATACTTA CTGAAGAAAA
  TTCTAGCACC AGGACATAGA TTTAAAAAAA AAAAACCTTA TTTTACAGAA ATCTTAGGGG
  CTGGAGGGTA TAGATCACTA GTAGGGTGCA GTCTTCATAT GTGTGAAGCT CTGGGTTCTA
  TCCCCAGCAA GGGGAATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52371637	NES15392173	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51160841					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52371637	NES15392173	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32427498 () rs orientation: forward

Symbol	Name	Function Class
Ccdc71l	coiled-coil domain containing 71 like	1290 bp upstream
Cpgi4541	CpG island 4541	933 bp proximal
Rr403262	regulatory region 403262	960 bp upstream
Tssr113128	transcription start site region 113128	1193 bp upstream
Tssr113129	transcription start site region 113129	1265 bp upstream
Tssr113130	transcription start site region 113130	1373 bp upstream
Tssr113131	transcription start site region 113131	1412 bp upstream
Tssr113132	transcription start site region 113132	1571 bp upstream
Tssr113133	transcription start site region 113133	1632 bp upstream
Tssr113134	transcription start site region 113134	1722 bp upstream