rs51161197 SNP Detail

Summary

• ID
  rs51161197
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55565281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACATAAAC TGGGTGATTG
  TATAGGCCTA TAATTTCGGC ATTAGGACGA CAGATATCTC AATAAATCAA TAAACAGAAG
  GACATTTTTA AAAGCAAGAA ATGTACTCAT CTGGACAACT AGGCTCCTCT CCTGCAAGGG
  AACTACAAAC CTCGCTTTGG AGTCACCGCA TCCCCGAAGG CTCTGGCTGG CTGGCTCCTA
  M
  CCCAGCTTGT ACTTAGAGGC ATCAGATGCA GCCTCAGATT TTCCTTGACA CCAACTTGCA
  CCACCATGCC AGGCTTAAAG TTCAAAACAA ACAAACAAAA CCCACACAAC CCAACACAAC
  CCCTCCCCCT TCTTTTAATG GTGGTGCTGG GATCTAACCC AGGGCCTCTC ACACATGCTC
  AGCAGCTACT ATCCGCACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61806173	NES17743067	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51161197					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806173	NES17743067	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55565281 () rs orientation: forward

Symbol	Name	Function Class
BC038268	cDNA sequence BC038268	1876 bp downstream
Cpgi5669	CpG island 5669	762 bp proximal
F12	coagulation factor XII (Hageman factor)	490 bp downstream
Rr480459	regulatory region 480459	1905 bp distal
Rr480460	regulatory region 480460	994 bp proximal