rs51162780 SNP Detail

Summary

• ID
  rs51162780
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54388609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATT GTTTATCTGG AACTCAACTT
  A
  CACTTGACTT CCTGAATTGT ATCTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss139556892	ENSMUSSNP2976697	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324635138	CHEV_14_54770827	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51162780					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54388609 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492143	regulatory region 492143	1511 bp proximal
Rr492144	regulatory region 492144	1877 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdv5	T cell receptor delta variable 5	1951 bp upstream
Tssr125542	transcription start site region 125542	1994 bp upstream
Tssr128536	transcription start site region 128536	1912 bp upstream
Tssr128537	transcription start site region 128537	1893 bp upstream
Tssr128538	transcription start site region 128538	1872 bp upstream
Tssr128539	transcription start site region 128539	1809 bp upstream
Tssr128540	transcription start site region 128540	247 bp downstream