rs51163943 SNP Detail

Summary

• ID
  rs51163943
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:62141525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATGCAT TAAAGGCTGC
  TCTCTGAGAA GTATTTCTCA CCAGGCAGTC TCTGTTAGGC TTAATACAAA CTCTCAGTCC
  ATACTTTGCT CATGCTGGAT GTTCTTTGTG TATCTATCCT GCAACACTTT GAATTCATGC
  CTTTCCCACT CAGTTCCCAA GTAGAAACTT ACAGCACTGC TTTAGAGTTA TGAAATCACC
  W
  GCCTTTTTCC ATCCATGTTG CAGCAGAATT TTTCTTACTT TATATATTTC TCCCTTCTTC
  ACACTCCACG GAGTATTTAC AGTGTGTCTG CACTTTGCTC TCTCTAGAGC TGTCTCACTC
  AATTGCCGAA GCTTCTCCCT TACACCATGT AACAAGTCCT TTGTGTCACA CTTGGATCCT
  TTCTTTCTGA ATTACAATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60476145	NES16455397	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51163943					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60476145	NES16455397	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:62141525 () rs orientation: forward

Symbol	Name	Function Class
Rr318921	regulatory region 318921	1676 bp proximal