rs51165551 SNP Detail

Summary

• ID
  rs51165551
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143611343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTTTCT TAGAAGATTA
  AAAAAAAAAA AAAGCTAAAT TTATTCAAAT AGACCAAAAG TGATTGGAAA GATTTTCTTT
  ATTGTTACTG TGTTGATCAG GCAAAAAGGA CTTCAGAAAT TGTAGTTTTT ATAACTGAAC
  TTTTTGTCCA GGCTTGAATT ATTTGTTCTT TGCCGTGTGC GATAAGGAAA GGATGGCGCA
  K
  GAATGGCTGG AGGGCGGTTA CCAGGAGGAA CGAGTGGGGG TACAAGATTA CAGGAACACA
  TTGTTCCTTG TAGTGTGTGC AGAGTGTAGT TAAGGTGTTT TCCCTTCCAG AGTATCTAGC
  ACAGTTCTTG AACTAGGCCT CTACTGGCTA GTTTGGCCTT GTACCGTTGC CAGATGCATG
  TTTCTGAATG TGCCGCTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852256	NES15998535	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51165551					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852256	NES15998535	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143611343 () rs orientation: forward

Symbol	Name	Function Class
Cyth3	cytohesin 3	within coordinates
Rr111093	regulatory region 111093	1858 bp proximal
Rr124733	regulatory region 124733	742 bp distal
Rr124734	regulatory region 124734	within coordinates