rs51165613 SNP Detail

Summary

• ID
  rs51165613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93224018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGTCGC TGTGGTAAAA
  GCAACTTACA GGAGAAAGGA TTTATTTTAG CTCATAGTTC CAGGTTGCAG TCCATCGTAG
  CAGGCAATCT AAAACTGTTA AGAAATAAAT CTGTTTTCCC TCTTGGCCAT TTATTTCCCA
  ACAATAACAA CTCTGAGACA AATTATTTAT TACTAAATGC CTAGGCCACA AGCTTTGGCT
  Y
  GTCCCCTGAC TAGCTCGTAA CTTATTTAAC CATTTAAACT ATTCTATGCC TTCAACATGG
  TTAGTGACCT CTTTTCAGCT TCATGCATCC AAGCCCAGGC CAAATCTCCT CTTTATTCTA
  TCCTGAATTC AGCTAACCGC TGGTTTACGT CTGTCTCCTC AGCCTTCCCC AGTGAATCTC
  CAGTACCTCT GACTATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148843916	ENSMUSSNP193757	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C		C
ss321614315	CHEV_5_93505185	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51165613					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93224018 () rs orientation: forward

Symbol	Name	Function Class
Gm71590	predicted gene, 71590	1015 bp downstream