rs51166329 SNP Detail

Summary

• ID
  rs51166329
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13013968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAGCAG TCACCATTAA
  GATAGATCCA CCTGTATCTA TCCCATAATG CTGGGTTTAC AGGCATGTAC AACCATGCCT
  GCCTGACATT ATTATTATTA TTATTATTAT AACATGGGTG CTGGAGATTC AAACTCATGT
  TCTCTCTCTC TTTTTAACAG CAGGCACTCT TACCCACTGA GCCGTCTCGG CAGTCCCTGA
  W
  TACACTTGTT CTTTTATTTC CTTAAGAGTT GTGTTCCCCT TTCCCCCAAG TCTTAGTCTC
  TGGCACAGCC AATATCCTTA GCTGGTCTTT GGATTTCTTT TTCAGGTACA ACTGATGAGA
  AAAAAAGAGC AAGAGAGGAA AGGAGAGACT TCTGCTGCCA ACATGCAGAG AAGTATTATG
  TAAGGCCCCT GCCATGCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60970709	NES16157957	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51166329					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970709	NES16157957	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13013968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	698 bp distal
Lig1	ligase I, DNA, ATP-dependent	within coordinates
Rr400108	regulatory region 400108	1100 bp downstream
Rr642459	regulatory region 642459	1909 bp distal
Rr642460	regulatory region 642460	1408 bp distal
Rr642461	regulatory region 642461	1595 bp distal
Rr642462	regulatory region 642462	767 bp distal
Rr642463	regulatory region 642463	1194 bp distal
Rr642464	regulatory region 642464	100 bp distal
Tssr64539	transcription start site region 64539	1477 bp downstream
Tssr64540	transcription start site region 64540	1168 bp downstream
Tssr64541	transcription start site region 64541	1142 bp downstream
Tssr70659	transcription start site region 70659	1334 bp upstream
Zswim9	zinc finger SWIM-type containing 9	1321 bp upstream