rs51168300 SNP Detail

Summary

• ID
  rs51168300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11890321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAGGGG CCCACTCTGA
  GGATGGAGGC ATAGGACTCA CAGGGCCTTG TTCCTTCTCC TGTGGATAGA GGGGACCTTG
  TTTTGTTCAT GGTTGCACCC TAGTAGTGTT TGCGAAAACA CTCCCAGAAA ACAAAAGTCA
  CATGGCGAAA TTTAAATATA TGATCCTGCT CCCAAGCTCA CCACGCTTTC AGGAAGGAGC
  R
  ACTTGGATTC TAACTTGAGG CTTCAGAACA GTACCTTACA CAGGGGAGAT TTCCCCAGCC
  CATTAGTGTG CTTGGCCCCC TCTCTCCATA CCCAGTCCAT AGAATGAGGT GCTGTGTAAC
  CCTTTTATGA CCTTGAGCTT CAAAATGATG TCACAATAAG CAGGGACTGG TTTCCTTCTG
  TCCACCCTGA CCTCCAGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60574280	NES16042074	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss322494115	CHEV_8_11840321	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51168300					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60574280	NES16042074	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11890321 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Rr659647	regulatory region 659647	910 bp proximal
Tex29	testis expressed 29	167 bp upstream
Tssr76253	transcription start site region 76253	180 bp upstream
Tssr76254	transcription start site region 76254	193 bp upstream
Tssr76255	transcription start site region 76255	247 bp upstream