GAGAG CAAAGTTAAT GGGAGAAAGT S AAGAGAACAG CAGCCTATTA AAAGC S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss61019285 | NES16107381 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | G | C | G | G | C |
SNP Consensus Information | ||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
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rs51169325 | SNP | C | C | C | C | C | C | G | C | G | G | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61019285 | NES16107381 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr7:71957828 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi19258 | CpG island 19258 | 1126 bp distal | ||||||
Gm39035 | predicted gene, 39035 | within coordinates | ||||||
Mctp2 | multiple C2 domains, transmembrane 2 | 1472 bp upstream | ||||||
Rr165673 | regulatory region 165673 | within coordinates | ||||||
Rr167990 | regulatory region 167990 | 827 bp distal | ||||||
Tssr67176 | transcription start site region 67176 | 1166 bp downstream | ||||||
Tssr72929 | transcription start site region 72929 | 1433 bp upstream | ||||||
Tssr72930 | transcription start site region 72930 | 1325 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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