rs51169369 SNP Detail

Summary

• ID
  rs51169369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74858697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTA TATCAACAAA GTCTTCCCAT
  Y
  GTCCAAAGGC CTACTTCCCA CTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136638874	ENSMUSSNP416000	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323007469	CHEV_9_74799222	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51169369					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74858697 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	1465 bp upstream
Cpgi22037	CpG island 22037	1069 bp proximal
D9Mit1008	DNA segment, Chr 9, Massachusetts Institute of Technology 1008	443 bp distal
Gm68252	predicted gene, 68252	372 bp downstream
Rr401515	regulatory region 401515	421 bp upstream
Rr401516	regulatory region 401516	1314 bp upstream
Rr683033	regulatory region 683033	210 bp proximal
Rr683034	regulatory region 683034	300 bp proximal
Rr683035	regulatory region 683035	670 bp proximal
Rr683036	regulatory region 683036	1392 bp proximal
Rr683037	regulatory region 683037	1683 bp proximal
Tssr86114	transcription start site region 86114	1437 bp upstream
Tssr86115	transcription start site region 86115	1659 bp upstream
Tssr86116	transcription start site region 86116	1741 bp upstream