rs51170513 SNP Detail

Summary

• ID
  rs51170513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140427483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTAAGG AGAAACCTGC
  AACCTCACTG TGTCTACATT TGTCCCAGCC AACACAAAGA GTTAAAGAAC CTGGAGAGTA
  AGGAGGCCCC TGGAGAGGTC GGGTTGGTCT CTGCAAGAGG AGTTCCCTGG AGAGTGTGGG
  AGCTCCTTGG AGACTTGGGG ACTCCCTGAA GAGGTGGGAG TTCCTGGAGA CTCGTGTGGT
  Y
  GCTGGAGATG TGCATAGCCC CTAAAGGAGA AGTCCACGGA GAGGATGGGG GCTCCCTGGA
  GAGGGTTAGT TCCCCCCAAA AACAGGATCT CTGGAAAAGG TAATGTCTGA AGAGAGGCCT
  TGGGCCAGAG GTCATTGTCT CCATCACACA CACTATGATC TAGAACTTCT TGTGGGACAA
  AGCCACATTC TAGAGCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61072227	NES16047751	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51170513					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61072227	NES16047751	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140427483 () rs orientation: forward

Symbol	Name	Function Class
C330022C24Rik	RIKEN cDNA C330022C24 gene	1881 bp upstream
Cimap1a	ciliary microtubule associated protein 1A	346 bp upstream
Gm45785	predicted gene 45785	within coordinates
Rr657757	regulatory region 657757	1791 bp distal
Rr657758	regulatory region 657758	1617 bp distal
Rr657759	regulatory region 657759	345 bp proximal
Rr657760	regulatory region 657760	1809 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	801 bp downstream
Tssr69848	transcription start site region 69848	184 bp upstream
Tssr69849	transcription start site region 69849	200 bp upstream
Tssr69850	transcription start site region 69850	214 bp upstream
Tssr69851	transcription start site region 69851	231 bp upstream
Tssr69852	transcription start site region 69852	246 bp upstream
Tssr69853	transcription start site region 69853	273 bp upstream