rs51170985 SNP Detail

Summary

• ID
  rs51170985
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133696287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC GGCCTTCTAG AGCTAGCTGA
  T
  TGCACCCGAT GGAGGGGGCC AACTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147513090	ENSMUSSNP1383430	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321344257	CHEV_4_133524891	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51170985					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133696287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15020	CpG island 15020	6 bp distal
Dhdds	dehydrodolichyl diphosphate synthase	52 bp downstream
Hmgn2	high mobility group nucleosomal binding domain 2	985 bp upstream
Rr398563	regulatory region 398563	1544 bp downstream
Rr601512	regulatory region 601512	485 bp distal
Rr601513	regulatory region 601513	within coordinates
Tssr39509	transcription start site region 39509	823 bp downstream
Tssr43836	transcription start site region 43836	1749 bp upstream
Tssr43837	transcription start site region 43837	1692 bp upstream
Tssr43838	transcription start site region 43838	1668 bp upstream
Tssr43839	transcription start site region 43839	1025 bp upstream
Tssr43840	transcription start site region 43840	971 bp upstream
Tssr43841	transcription start site region 43841	850 bp upstream
Tssr43842	transcription start site region 43842	355 bp upstream