rs51171570 SNP Detail

Summary

• ID
  rs51171570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:14067190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGCCTGG GGGGGTCTTT
  TTTTTTTTTT TTTAAATGCA TAGATTTTAA AGTTGAAAGA AAATAACACC TTGTTCTAAA
  AAATTTCTTC TCTGTAAATT GTAGAGAAAA TGAAGATAAA CTGTAACCCA ACACTTGTGA
  AAAATACCCT GAAATTATAG TACATGTGAG AGAGTGCTTA GAGGGTGGTC AGGTTATTTT
  Y
  TGAATTTTCT TTAAATTATT GAAATGAAAT TCACACAGTA TACTGTCATC TGCATTCTGG
  TGTGTGCAGC TCTACCCTAA GAGTGTTTCT CCAGTGTAGC AAGGATAGTC ATTCTCTCTT
  TCCACAGGCC CTGGGGTCCA CTTTCTTAGT TTTTTAGTGT GAGGCACTTG CTTTTTTGTA
  ATGAGCCTGT GGTGTTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60543075	NES16555058	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	C
ss145198072	ENSMUSSNP1317175	ENSEMBL	ENSEMBL_Sanger	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51171570					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60543075	NES16555058	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14067190 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afdn	afadin, adherens junction formation factor			Intron
				Noncoding-Transcript-Variant
Tssr142714	transcription start site region 142714			835 bp downstream
Tssr142715	transcription start site region 142715			809 bp downstream
Tssr142716	transcription start site region 142716			768 bp downstream
Tssr142717	transcription start site region 142717			745 bp downstream
Tssr142718	transcription start site region 142718			732 bp downstream
Tssr142719	transcription start site region 142719			162 bp downstream