rs51171604 SNP Detail

Summary

• ID
  rs51171604
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:99450158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGACATTAG AAACATAGTT TCTCTAGTCT CGGAGCCCGG
  ACCTCAACAG CAGAGCACAG CAAAGCGGTT TAAATAACCA TACACAATAG CGCGAGTTGC
  W
  GCTGATGTGA AAACCTCCAT TGCCAAGAAG CAAGCGGTGT TGGCAGGTGC CCTGGTGGTA
  GGGACTTGAC AGAAGACGCA CAGCCCTGGT CTGGCAGCTC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61443619	NES16826047	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51171604					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443619	NES16826047	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99450158 () rs orientation: forward

Symbol	Name	Function Class
Armc8	armadillo repeat containing 8	Intron
Cpgi22196	CpG island 22196	8 bp proximal
Rr401625	regulatory region 401625	700 bp upstream
Rr685420	regulatory region 685420	within coordinates
Rr685421	regulatory region 685421	534 bp proximal
Tssr91072	transcription start site region 91072	535 bp downstream
Tssr91073	transcription start site region 91073	744 bp downstream