rs51172585 SNP Detail

Summary

• ID
  rs51172585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:58319877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCTTGAT CAAGTTCCTG
  CAGAGTGCAT TCTTTTGCCA AAGCTGGTTC CCACCAGTAG GTACTTACAT TACATCACCC
  TTTTCTAATA TCTGGATTCA TTTATTTATA TTCTATCTCA TTTGCCCCTC CTCCCTGGAG
  CTTGGCAGCC AAACTTTATT TTTATCTCTT CTAAGTTACT AAGGTCCTAA ACCATGTCCC
  Y
  GTGCTCTGTG TTAAATGAAG CCTTCTTGTG CTTTCCACTT GGCCAGTGAT ATATGACTTA
  AGGGTTCACA CTAGGCCTGA CCTCATACCC AGAGTGCTGA TGCTAAGACC TAGAAAGTTA
  CATATTTGTG CAAATTAGAA AAGAACACCC CACTAGCTCC ATGCATGCCT GTGGGGACCC
  AGTACCTATG GTTTTCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60471650	NES16460356	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51172585					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60471650	NES16460356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:58319877 () rs orientation: forward

Symbol	Name	Function Class
Rr404899	regulatory region 404899	817 bp downstream
Rr517409	regulatory region 517409	within coordinates
St3gal6	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	within coordinates
Tssr4919	transcription start site region 4919	333 bp downstream
Tssr4920	transcription start site region 4920	359 bp downstream
Tssr138857	transcription start site region 138857	795 bp downstream
Tssr141615	transcription start site region 141615	167 bp upstream
Tssr141616	transcription start site region 141616	152 bp upstream
Tssr141617	transcription start site region 141617	112 bp upstream
Tssr141618	transcription start site region 141618	305 bp downstream