rs51173307 SNP Detail

Summary

• ID
  rs51173307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72899858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGGCTT TCTACCATCC
  TCCATCACAG GGAAGGATGT TTGAGTCGGG CAGAGGAGAC TCATGAAGCA CTTGAAGGAT
  TCTTTGGCCT CAGTTCCTCC TTGGGGGCCT GAAGTTGAAC TGAAGTTGTG CTGTCTTTCC
  AAGGCATCCT CTTCACCCTT CAATACCCAG TCAGGCTAAC CAGCCTTGTT TCCAACCGTG
  Y
  GTCTCAAGTC TGGATCCTGC CTCAGTTACC CACCATCTGG GCCCTGTGAC TTGAACTGAC
  CTCATTTCTA CCTCAAGTTC TTCCCCTGCC TTCTTTTTCC TCTCAAATCT CAGAGAGTTG
  ATTAGATGGG AGACACCAAG GAAAATTCTA TTGGTATTTT CCTCTCTCTG TCTCTTTCTT
  GTCCTCCCCA CCCCCAGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60750501	NES16391813	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51173307					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750501	NES16391813	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72899858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	1666 bp proximal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr34508	regulatory region 34508	659 bp distal
Rr34509	regulatory region 34509	1143 bp proximal
Tssr7342	transcription start site region 7342	1665 bp upstream
Tssr12187	transcription start site region 12187	1941 bp upstream
Tssr12188	transcription start site region 12188	1625 bp upstream
Tssr12189	transcription start site region 12189	886 bp upstream
Tssr12190	transcription start site region 12190	390 bp upstream
Tssr12191	transcription start site region 12191	329 bp downstream
Tssr12192	transcription start site region 12192	797 bp downstream
Tssr12193	transcription start site region 12193	962 bp downstream
Tssr12194	transcription start site region 12194	1142 bp downstream
Tssr12195	transcription start site region 12195	1502 bp downstream
Tssr12196	transcription start site region 12196	1596 bp downstream
Tssr12197	transcription start site region 12197	1614 bp downstream
Tssr12198	transcription start site region 12198	1630 bp downstream