rs51173380 SNP Detail

Summary

• ID
  rs51173380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163438529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATGATTG AAGTCAGAGA
  TCTCTCTTGT GCTTGCCAAG CCTCCGGCTT CCCCCAGCCC AGGTTTGGAC ATTTTTCCAG
  CCAAGCTGGG CTCCAAACCA CTAATTGGGC AACTGTTGAC CTCAGAGTAA GTCAGCCCCA
  GCAAGAGAGA TTGTTGAAGC GCATGGGATG TTTTGTTCCT TAGAATCCCA AGAATTAGAG
  Y
  GAGTCCTCCT CATCCCACAA CTCTAGCGCC CAACCCCTCA CGGCCATTTG CTTGTTTTGT
  AACTCGGGCA GGTTCCTCTG CCTCTCAGAG CTCCAGCCTG CTCCCCTCCC CAAGAGAACC
  CATAGGGGCA GGTGCCCAGT AAGGGAAGTT ATTACTGCAA ATAGCACTCA CTGAATGCCA
  AACCTAACAA AGTGTGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148206300	ENSMUSSNP2437028	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51173380					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163438529 () rs orientation: forward

Symbol	Name	Function Class
Rr397463	regulatory region 397463	1056 bp upstream
Rr569428	regulatory region 569428	within coordinates
Rr569429	regulatory region 569429	1130 bp proximal
Rr569430	regulatory region 569430	1261 bp proximal