rs51173950 SNP Detail

Summary

• ID
  rs51173950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40502932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGAGAA ACAGGTCTGC
  CATGTCACAT CGGGACATTT TCCTACTTAC TGAAATGTAT CTGTCACTGT GCGACAGCTA
  ACTTTTGTGA TACTCCTATG AAATGTGTAG GGAATTTGGA CAGAACAGAA TCAATCTATA
  GTCAGAGGTC CTCTGGACAG TCTTTTCCAG GAGCACACAC AGACCGTGAG GTCCTAGGCA
  Y
  CCAGGAAACG GATCCAGAGC CCAGGCAAGT GTCTTACAGG TACCTTGAAT TTTGCCAATA
  GATATGAGCC CTGCCTTAGC TGAGTTGCTC AGTCGGTGAT GGGACTCCAG GCTGAGGTGA
  CAATGAACAC AGAATTTGGG AGACTCTTGA AAGGAGGGGA ATGTTGAACT CACGGTCAAC
  ATATGAGGCT GCAGAGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721695	NES16361172	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51173950					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721695	NES16361172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40502932 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	within coordinates
Il18r1	interleukin 18 receptor 1	1780 bp upstream
Rr16188	regulatory region 16188	1669 bp proximal
Rr29358	regulatory region 29358	1868 bp proximal
Rr371160	regulatory region 371160	1481 bp upstream
Tssr6462	transcription start site region 6462	1523 bp downstream
Tssr6463	transcription start site region 6463	1439 bp downstream
Tssr6464	transcription start site region 6464	1414 bp downstream
Tssr6465	transcription start site region 6465	1869 bp upstream
Tssr6466	transcription start site region 6466	1931 bp upstream