rs51176179 SNP Detail

Summary

• ID
  rs51176179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126932236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCACAGA TATGCATGCA
  CACAATAATA AAAATAAATC TAAAATTTAA ACCTTTTGTT ATTGGTGGGG AGTGGGGGGG
  GGGCTACCAT AGTGCACAGG TGGGGGTCAG GGGACAACTT TGAAGGGTCT GTTCTCTCCT
  TCCACTGTGG CTCTTGGACC TAAATTCAAG CGGTCAGGCT TGTATGGCAA GTGTTCTGAC
  Y
  CACTGAACCA TCTTACGGCT GCTGTTGTTG TTGTTGTTTT TTTTGGTTTT TTGTTTTGTT
  TGTTTTGTTT TTGAGACAGG CTGTTTCTGT GTAACAGAGC CCTGGCTATC CTAGACTCAC
  TTCATAGACC CAGGACGGCT TTGAATTCAC AGAGATCCAC CTGTCTCTGC CTCCCGAGTG
  CTGGGATTAG AGGCGTGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145879529	ENSMUSSNP1517627	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs51176179					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126932236 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	702 bp downstream
Tssr69201	transcription start site region 69201	506 bp upstream
Tssr69202	transcription start site region 69202	538 bp upstream
Tssr69203	transcription start site region 69203	586 bp upstream
Tssr69204	transcription start site region 69204	717 bp upstream
Tssr69205	transcription start site region 69205	1649 bp upstream