rs51178153 SNP Detail

Summary

• ID
  rs51178153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:84852640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCAGGC GAGAGAGCAC
  ACATGTGCGC GGAGAGCAAC GGCAACAATA CCATACAGTA GTAGCCTTGC TTCTCCTGCC
  TCAGACAATG AGCCTTTGTG GAAGGCACAT TCCATAGCCA GGTGTGTTTG CCAGGGATCT
  CCCTCACACC GCTGCCCTTC ATCGCTATGG CTGACTAGAG GGAGTCAGAT ACCAGCTCTG
  R
  ACACTTAAGA CAACCTTGTG CAATATAACT CTGTCCCTTC CCCATGGGCA GGTGGAGCAC
  TGCCAGGGTC CTCAGTGATT CAACCCCCTC TCACCTCGCC TCCTACTCTA TGAACTCCCC
  ATTCTTCAAG AAGTCCCCTG TCTCCCTAAG ATACTCCAGA AAGATCCATG GCTTCCCTGG
  AGTCCTCTGA GAAGGGCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61660008	NES17614301	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51178153					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61660008	NES17614301	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84852640 () rs orientation: forward

Symbol	Name	Function Class
Ltbp2	latent transforming growth factor beta binding protein 2	within coordinates
Rr469728	regulatory region 469728	1976 bp distal
Rr469729	regulatory region 469729	within coordinates
Rr469730	regulatory region 469730	796 bp proximal
Tssr114362	transcription start site region 114362	1159 bp upstream
Tssr114363	transcription start site region 114363	1186 bp upstream
Tssr114364	transcription start site region 114364	1212 bp upstream