rs51178199 SNP Detail

Summary

• ID
  rs51178199
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48409534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCTTCTTG TCTTGCCATT TGATGTCCAA TTCTGTACTA
  AAAAGTCGTT TTTCCTTCAA GTTGGTGGAC ATTGGAAAGT AAGGATTAAA AAGTCTTAGA
  W
  AAAAAAGGCT AGAACCACAG GAAATGAGGA CACTGGCTTG AAAGAAGGCG CTAATTACAA
  CACCAGGCTC AAGTACTCAG CACCCCAAAA TCTAAAAGTA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61394035	NES16775893	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51178199					SNP	A	A	A	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394035	NES16775893	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48409534 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	1877 bp upstream
Gm70225	predicted gene, 70225	within coordinates
Rr195326	regulatory region 195326	1334 bp distal
Rr206379	regulatory region 206379	1733 bp distal