rs51178490 SNP Detail

Summary

• ID
  rs51178490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119910740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTTTCC TCTTCACTGG
  ATTTAAAACT AAAATGAATG GCTTTATTTA AACTTGAGGG GAGGAGGGTC AGTTTGAGGA
  TTCTGCAAGA CTGACCAGTG TTAGTCTTTA CAGGGTTACA CCTGACAAGG GCAAACTCAC
  TTGTTTATGT CTTTTACTGA AAATGTTACA TCATTTTATT GTACAAAGAG CAAGCAAGGG
  R
  TAGTTATCTG TTTATATGTG GGCAGTATGC TCAAGGTGCA CCGATGCAAC AGTGATATGA
  CCAAAATGGA AAGTGAGCTG AGCCTCTGAA AGGTCTGAGG AAAGATGAGC ATTGTCTCAG
  AAAGCACTGC TTTCAATTTG CCTTGCTACC TTTCTCATAC TCACTTCTGA ATATTCTGTT
  GTAAGTTCAA GGCCACCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61734973	NES17669802	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51178490					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61734973	NES17669802	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119910740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5238	CpG island 5238	255 bp distal
Rr474318	regulatory region 474318	585 bp distal
Tmem196	transmembrane protein 196	within coordinates
Tssr115576	transcription start site region 115576	872 bp downstream