rs51179369 SNP Detail

Summary

• ID
  rs51179369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60962843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGTTAG TCGTAAGTGC
  CTGAAAAGGC CAGAGACATC ACATCCCTCC AAGTTACAAG TGGTTGTAAA CCACCCAGTG
  TGGGTGCTGG GAATGGAACA AGGGTCCTTA GTGCTCTTAG CCCTTGGTTA TCTCTCTAAG
  CCCAACTGTG TTGGTTCTTA GGAAGACAAT GGGAATCCCG GAGTTCTGTA AATTCTCTAT
  Y
  TCCAAAGACA GAATAATAAC AAAGTAAAAC AGGTCATGAC AAGTTTTTGG GGTAGGCAAC
  CAAGTGATCA TGGAAATTAC TTTTGGCTTA ATCTTAATAG GTTTCTACAA ACAACAGGCT
  CATTCCCCTA TGAAGAAGCA CCTCACAAGG ACAGCCCATT GAACAGTTTT GTGGAATAGC
  CTAGTATTAT CTCCTTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52343453	NES15282502	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		C
ss323327732	CHEV_10_60589812	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51179369					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52343453	NES15282502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60962843 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1829 bp upstream
Rr219927	regulatory region 219927	558 bp proximal
Rr228137	regulatory region 228137	1159 bp proximal
Sgpl1	sphingosine phosphate lyase 1	within coordinates