rs51179492 SNP Detail

Summary

• ID
  rs51179492
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79991021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTC TCTCCACCCC TCACCATCAG
  C
  TCTCCCGTAC CCCAAGTCAC CCTCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145142245	ENSMUSSNP2891471	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322281150	CHEV_7_87486159	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51179492					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79991021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	775 bp distal
Cpgi19332	CpG island 19332	1610 bp proximal
Hddc3	HD domain containing 3	1831 bp upstream
Rr400403	regulatory region 400403	872 bp downstream
Rr400404	regulatory region 400404	1670 bp upstream
Rr649870	regulatory region 649870	564 bp distal
Rr649871	regulatory region 649871	905 bp distal
Rr649872	regulatory region 649872	236 bp distal
Rr649873	regulatory region 649873	1350 bp proximal
Rr649874	regulatory region 649874	1794 bp proximal
Tssr67435	transcription start site region 67435	1818 bp upstream
Tssr67436	transcription start site region 67436	1892 bp upstream
Tssr73215	transcription start site region 73215	1263 bp upstream
Tssr73216	transcription start site region 73216	1123 bp upstream
Tssr73217	transcription start site region 73217	1063 bp upstream
Tssr73218	transcription start site region 73218	1042 bp upstream
Unc45a	unc-45 myosin chaperone A	273 bp upstream