rs51180335 SNP Detail

Summary

• ID
  rs51180335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109559021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCCTCCT GGCTCATTGA
  GTAGACCAGG ACCTCTCTGC CATGGCAAAT CACAAACAAC CCTAGGATGT CTTTTAGGAT
  GAAGTGAACA ATGTTGTTCC CTTCGTCAGA GTATGAGTTC ATTGTGAAGG GCCGGTAGCA
  TCTCATCTGG TGAAGGCCGA AACCGAACGA TGCTCTCCAA GTGTCTTCCG TGTGTGTGAC
  Y
  GTGTGCCTCA TCTCACTTTC CTTAATCCCA AGCAGCTCCA GTTTTGTGAA CCATGCCGCT
  CCATGTAGCT GGTCGAATAG CTCTGGTACC ATCTGCGTGT AGTCTTGTCT GTCAGTCAGC
  ATGTCATACA GTATCCAGTA TTCCTCTTGC TCCCTGGCTT TCTCTTGCTG CCTGGCTTTC
  TCTTGCATCC TGGCGCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61717608	NES17648268	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51180335					SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717608	NES17648268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109559021 () rs orientation: forward

Symbol	Name	Function Class
6430411K18Rik	RIKEN cDNA 6430411K18 gen	within coordinates
Mir127	microRNA 127	259 bp upstream
Mir433	microRNA 433	749 bp downstream
Mir434	microRNA 434	1919 bp upstream
Mirc43	microRNA cluster 43, including Mir341 through Mir1188	within coordinates
Rtl1	retrotransposon Gaglike 1	within coordinates
Tssr115134	transcription start site region 115134	1669 bp downstream