rs51181242 SNP Detail

Summary

• ID
  rs51181242
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124749053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT AAACCCTTCC CGAGGTAGTC
  W
  GAGGGCGAGG ACAGGAAGGG AGGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322855969	CHEV_8_126546214	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51181242					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124749053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21265	CpG island 21265	468 bp distal
Mir1967	microRNA 1967	327 bp upstream
Rr672602	regulatory region 672602	1317 bp distal
Rr672603	regulatory region 672603	1472 bp distal
Rr672604	regulatory region 672604	1315 bp distal
Rr672605	regulatory region 672605	427 bp distal
Taf5l	TATA-box binding protein associated factor 5 like	917 bp upstream
Tssr80012	transcription start site region 80012	1113 bp downstream
Tssr80013	transcription start site region 80013	799 bp downstream
Tssr80014	transcription start site region 80014	784 bp downstream
Tssr80015	transcription start site region 80015	735 bp downstream
Tssr83422	transcription start site region 83422	1359 bp upstream
Tssr83423	transcription start site region 83423	1208 bp upstream
Tssr83424	transcription start site region 83424	869 bp upstream
Urb2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	within coordinates