rs51181938 SNP Detail

Summary

• ID
  rs51181938
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30256468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGCAGATGG GGTACAGTGG TGTGTTCTCA CTGAACTGGG
  CCAAGTCCAC ACTCCGGTCA AATAGCTTGA TCACATACGT ATCTGGGGTG GTAAGGTAGG
  S
  GATAAGTGTG TAGTTCCTGG CTCCACACCC ACCCTCTCAG TCCCCTGCCT ACTCACTGGA
  TCTCTGAGGA CCCCCCTCAG CGAGCCCATC GTCCATCTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990772	NES16136603	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	G	C	C		C	C		C
ss148682451	ENSMUSSNP4421061	ENSEMBL	ENSEMBL_Sanger	f	SNP							G
ss322135250	CHEV_7_31342062	CHEVERUD	SCREENING_POP	f	SNP										C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs51181938					SNP	C	C	C	C	G	C	G	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990772	NES16136603	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30256468 () rs orientation: forward

Symbol	Name	Function Class
Hspb6	heat shock protein, alpha-crystallin-related, B6	1600 bp downstream
Lin37	lin-37 DREAM MuvB core complex component	Intron
Rr644851	regulatory region 644851	1636 bp proximal
Tssr65787	transcription start site region 65787	1996 bp downstream
Tssr71791	transcription start site region 71791	1699 bp downstream
Tssr71792	transcription start site region 71792	1730 bp downstream