rs51182409 SNP Detail

Summary

• ID
  rs51182409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:145916325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATAAATA AATAAATAAA
  TAAATAAATA AATAATCTCA AAAGAAATAA GAACCCTTAA AAACTGGCAT TTGAAATGCA
  AATGAAGAAA ATATCTAATA AAGAAAACTG GCAACCACTC TCTAAACTAT ACTGAAGGAT
  TTCAATGTAT ATGTTCCACA GCAAACCACC ACAAATACTT AATATAAGGG ATGGTGTATT
  Y
  TTCAATCCAA AGAAGATACA GAGAACTGAA TTGGATGGTT TAGAAAAAAA GTATTTACTT
  AACTGATGAA GAATCTGTGG TAACCAATTG TTGGGCTGAT CATTTTCTGC ACTTTATAAA
  GGTTGTCTTC AAATTATTCT AATGCTATCT CTGTCCCAGC AGAGACCTGA CTACAGGCTG
  GATTTTTATA TTGTTATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60853483	NES15995479	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51182409					SNP	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60853483	NES15995479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:145916325 () rs orientation: forward

Symbol	Name	Function Class
Cyp3a25	cytochrome P450, family 3, subfamily a, polypeptide 25	within coordinates
Tssr49764	transcription start site region 49764	1439 bp upstream
Tssr54456	transcription start site region 54456	862 bp downstream
Tssr54457	transcription start site region 54457	1713 bp downstream
Tssr54458	transcription start site region 54458	1740 bp downstream
Tssr54459	transcription start site region 54459	1785 bp downstream
Tssr54460	transcription start site region 54460	1806 bp downstream
Tssr54461	transcription start site region 54461	1941 bp downstream