rs51183588 SNP Detail

Summary

• ID
  rs51183588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30331051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTTATC TGATGGGTTC
  CTTGGAGTAG ACATTTTTAC TCCTTCTTAT GGAAGTAGAA AGAGAGCTCA GAGGGGCCAA
  GGACCTGGTA AATCAGGCCA GGATTCAAGC TCAGTCACAG CAGCTACAGA GTTGGGCTCA
  CTCACTTGCC AAGTCCCAGC CCACTAGCAC ACAAGCACAT GCAAGACCGT GGCTCACAGG
  Y
  CTCTCACCCA GAACTCAGCC TTGCCGTTGT TCTTCTTGCA GCGCTCAGCC AGTACTGACA
  CGCCCACCGT GACCTCAGAC ACGGGGTCTT CAGCTGCCCG CATCAGCACA ATCTGGATAA
  CACGGCCTTC ATAGATGTGG GCGTCGAACG TTGTCTTCCA CTCAGGATAC ATGGTGGGCT
  TCTTCTGTAC CAGTGTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709015	NES15548845	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51183588					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709015	NES15548845	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30331051 () rs orientation: forward

Symbol	Name	Function Class
Gm62449	predicted gene, 62449	within coordinates
Prkcd	protein kinase C, delta	within coordinates
Rr292184	regulatory region 292184	1250 bp distal
Rr292185	regulatory region 292185	within coordinates
Rr404042	regulatory region 404042	1044 bp downstream
Tssr4363	transcription start site region 4363	1320 bp upstream
Tssr124839	transcription start site region 124839	1171 bp downstream
Tssr127873	transcription start site region 127873	1290 bp upstream
Tssr127874	transcription start site region 127874	1273 bp upstream
Tssr127875	transcription start site region 127875	1270 bp upstream
Tssr127876	transcription start site region 127876	51 bp downstream