rs51183858 SNP Detail

Summary

• ID
  rs51183858
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73605579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTCAGCC TTGGCTCAGC
  CCAATAATCT TGCCTTCCCA CGAGATACCG AGTGAATCTG AGATAGTGCA GAAGTCCCAG
  TGGAATGGGC TAAAGTATTT AAACCACAGC CAACCCCAAG TGTAGCCAAG GAGCATCAAG
  CACAGTGGGC CAGGTGTCTA CCTTGTAGCT GAGAGTGCAG AGCCCAGGGT AAGGCTGACT
  S
  CACCGTGTCC CGGCCTGGCT AGGGCAGGGA CACCTTAGCT GTGATGCTTT CCTAGGCCCA
  GTACACCCCG CTGATACCAG GGGATCTTCC CTCTGCTCTT CCCTTGGCCT GCCAAGACGA
  GGGCATTTGG ATGGACAGAG TCAGGCTAAT TTGGGATCCT AGGCCTGTGT TCACAGCTGG
  GAGGCAACAC CCAGAGAATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52569515	NES15628721	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G	G	G	G	G	C	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51183858					SNP	C	G	G	G	G	G	G	G	G	G	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52569515	NES15628721	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73605579 () rs orientation: forward

Symbol	Name	Function Class
Ptp4a3	protein tyrosine phosphatase 4a3	within coordinates
Rr311850	regulatory region 311850	778 bp distal
Rr369950	regulatory region 369950	1008 bp downstream
Rr369951	regulatory region 369951	1252 bp upstream
Tssr134712	transcription start site region 134712	1341 bp downstream