rs51185394 SNP Detail

Summary

• ID
  rs51185394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:120155731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGTCCCA GCCAGCAAGA
  GACTTTCCCC CAGGGTGGCA GAAATAAGCC ATCTTGTCTC TCAGTTCCAC CCAGCCCCCT
  TCACTCTGTG CCCCATCTCT TTGCCAGAGA CACCAGCACT CACCAGAGAC AAGCCCAGTG
  CTCCCCATGC CCAAGACTCC TGGACAGTTA AACAGATGGA CAGATGTCAA AGTCCCCATG
  R
  ACATGATCCA ACTTCAGCTC GCTCTCAGCC TCTCTTCCTC TCCTGTCCTG CCCACCCTGG
  CTCAGCTTCC CCTCTCTCCT GCCCACAGCA TTCCACGGAA CTCATTCCTG CCTCACAGAT
  CTCTCTACTC CTCCACAGCT TGAGGTCAGC CACAGCTGAT GGGTCAGTCA CAGCTAGCAG
  AGCCTACACC ACAGGAGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60669977	NES16249638	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51185394					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60669977	NES16249638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:120155731 () rs orientation: forward

Symbol	Name	Function Class
Gm32006	predicted gene, 32006	within coordinates
Gm64145	predicted gene, 64145	within coordinates
Rr401165	regulatory region 401165	604 bp downstream
Rr671127	regulatory region 671127	1257 bp distal
Rr671128	regulatory region 671128	294 bp distal
Rr671129	regulatory region 671129	581 bp proximal
Rr671130	regulatory region 671130	1198 bp proximal
Tssr83122	transcription start site region 83122	55 bp upstream
Tssr83123	transcription start site region 83123	within coordinates