rs51187897 SNP Detail

Summary

• ID
  rs51187897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46859422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGAGAAA AACGCCATTA
  AAAAAAAGTT AAATATTTTA AAAATATATA TTTATAGATT TGTTTTCACG TCATCTCCTC
  AAATAAAAAG TTCAAAATCA ACTCTTAAGT AAAGCAGCTG GGAGAAGGGG GAAGACCAAG
  GGGAGGAAGA GACCGCTAAC AGTGGTTCCC TCCAACCCAG GAGCCCCTGC AGGTCCGCGG
  R
  AACAGAGGCA AGGCAGGGCA GGCGGCCCCA GTAACCTGCC CGGTGCACAG GCCCAGCTGC
  TTCAGGAGCT GAAAGGGGCA GAGGGCATCG GCTGAGGGCA CAAGCCCCCA TATCTCTCCC
  AGCTGGCTCC CTGAGGGGCA GGGGCCGGGC TCTTTTGACC CAGACCATGG CAGACACAAA
  GCTAACCAGA GGTCGCCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62758994	NES17342667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		G	G	G	G		G
ss325404792	CHEV_17_46685445	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51187897					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62758994	NES17342667	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46859422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9232	CpG island 9232	1900 bp distal
Rr527758	regulatory region 527758	1669 bp distal
Rr527759	regulatory region 527759	1174 bp distal
Rr527760	regulatory region 527760	472 bp proximal
Rr527761	regulatory region 527761	859 bp proximal
Srf	serum response factor	within coordinates