rs51189428 SNP Detail

Summary

• ID
  rs51189428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30259891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCCAAGCT GTCTCTGAAC TCCCGGAAGG CCTCCTGCCT
  CAGCCTCCCC AGTGTGTGAT TAACACAACA ACCTGTTGGG TATATGCTTT TCTTAACTTA
  Y
  TGGGGGGTGG GGCACACCTG TAGCAGTCAG ATCACTTACA GGATTTGAGG ATCAAACGCA
  GGTCATGACT GGCAGCAAGT GTCCCTACCA TTGAGTTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148682517	ENSMUSSNP4669886	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss322135274	CHEV_7_31345485	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51189428					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30259891 () rs orientation: forward

Symbol	Name	Function Class
Lin37	lin-37 DREAM MuvB core complex component	628 bp upstream
Psenen	presenilin enhancer gamma secretase subunit	1399 bp downstream
Rr400243	regulatory region 400243	570 bp downstream
Tssr71791	transcription start site region 71791	1719 bp upstream
Tssr71792	transcription start site region 71792	1681 bp upstream
Tssr71793	transcription start site region 71793	935 bp upstream
Tssr71794	transcription start site region 71794	814 bp upstream
Tssr71795	transcription start site region 71795	624 bp upstream