rs51190214 SNP Detail

Summary

• ID
  rs51190214
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:28312771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATAGAGC CAGGCCTCTG
  GTCTTTCAGT CCCCAGAAGC CTTTACTTGG AGGAAGGTAG CCTGGAAAAC AGTCACTTTC
  TGAGGTTGTT ACTTCACAGG CACAAGCCTC AGTGTGTGTT ATTGAGGACT CTTATCTCCA
  CGTCAGCTCA TCTCTGCTTC TGTTTTTCAC CAGCCTCAGT CATCCTCGTC CCATCTGGAA
  M
  TTTGCACATG TTTCTTCTTT CTTCACATTT CCAATAACTC TTCCTATCTC AAGCCACCTT
  TCCTGAGTTA ATGCAACAAT AGCCTCACCC TCACTTCCTG ATAAGAAATC AGACCAACAG
  GTGTCTGAGA AGATCTGAGG AGGATACCAC TGAGCAGCAG GGACAGAGGA CCTGGGACCT
  TCTGACCAGG CTCAGCTTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136237822	ENSMUSSNP6537406	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51190214					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:28312771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21517	CpG island 21517	1379 bp proximal
Opcml	opioid binding protein/cell adhesion molecule-like	within coordinates
Rr206121	regulatory region 206121	1429 bp proximal
Tssr84179	transcription start site region 84179	1820 bp upstream