rs51190346 SNP Detail

Summary

• ID
  rs51190346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63081463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGTTTCT GCAGTTGGCT
  GGATACTTGC TTGTTTGGGC ATTGGACACA TGCCTTATTT ACTGTTCTCA TTAAATGTAT
  GTAAACACGA AAACCTAATT TCATTAGAGT ACTTATATAG CAGAGTTAAA GCCAGTTACT
  GTTTTAAGTT TTGCAAAGAA TAGTAGAAGG TGATGTCATT TCCTAAACAT TTGTATATGG
  Y
  CCTTTAAAAC TGAGAGAACT GACTGTCACC CCAAGCATAT TATAAGTATT AAACAAGTGC
  AGTCCTCATT TTAGCTTAAC ACTCGATGAG AGAGCAGCTT GCTTTGAGGT CTTACTAACT
  TTTGTTTTTC TCCTCAGACA TAGGGTACCT CCCAGTTTCC AGTGTTTCAG AAGGGACTTT
  TGTATTGAAA CTGGAAGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss52347386	NES15279476	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C	T		T
ss323333177	CHEV_10_62708432	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs51190346					SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52347386	NES15279476	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63081463 () rs orientation: forward

Symbol	Name	Function Class
1700120B22Rik	RIKEN cDNA 1700120B22 gene	1531 bp upstream
Cpgi1647	CpG island 1647	1106 bp distal
Gm66860	predicted gene, 66860	1827 bp downstream
Herc4	hect domain and RLD 4	within coordinates
Rr432766	regulatory region 432766	1751 bp distal
Rr432767	regulatory region 432767	1068 bp distal
Rr432768	regulatory region 432768	565 bp distal
Rr432769	regulatory region 432769	718 bp distal
Rr432770	regulatory region 432770	1829 bp proximal
Tssr93750	transcription start site region 93750	1913 bp downstream
Tssr93751	transcription start site region 93751	1838 bp downstream
Tssr93752	transcription start site region 93752	1720 bp downstream
Tssr93753	transcription start site region 93753	1698 bp downstream
Tssr93754	transcription start site region 93754	1671 bp downstream
Tssr97911	transcription start site region 97911	1514 bp upstream