rs51191573 SNP Detail

Summary

• ID
  rs51191573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29978477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGTCTA TTTCAGATTA
  TTCATTACAC TAAGTATTGT TATTTCTTTA TATGTCTCGA TGGAAAAACA TGTTTTTGCC
  ATGTGTGTCA CTTGTCCTTG TGACTCCTCT TAACCCTCAG GGTACAAACT GTCTGCTGCT
  CAGACTAAAG TTGGCTACTA CAGGAGACTT TAGCTTGCCT CATTTATGAC TCCATTCTCC
  Y
  AGGTCCCACT GCCTCTAGAC TAGTAGCCAA TAGCTCCGTA GGTAAAAGCC CTTGGGGCCA
  AAGCTGACTC TGGGAGAATG AACTCTCAAA AGTTGACCTC AGCCAGTCTG GTCTACACAG
  CCAGTTCCAG GTCAGCCAAG GCTACACGGA GAAACCCTGA CCAAAAAAAA AAAAAAAAAA
  AGTTTTACTA ATAGCATTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60991486	NES16140560	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51191573					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991486	NES16140560	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29978477 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	1981 bp upstream
Cpgi18786	CpG island 18786	684 bp proximal
Gm71678	predicted gene, 71678	1221 bp downstream
Rr400235	regulatory region 400235	1214 bp upstream
Rr644765	regulatory region 644765	552 bp proximal
Rr644766	regulatory region 644766	991 bp proximal
Rr644767	regulatory region 644767	1357 bp proximal
Rr644768	regulatory region 644768	1846 bp proximal
Tssr65667	transcription start site region 65667	1035 bp upstream
Tssr65668	transcription start site region 65668	1134 bp upstream
Tssr65669	transcription start site region 65669	1482 bp upstream
Tssr71721	transcription start site region 71721	1283 bp downstream
Wdr62	WD repeat domain 62	within coordinates