rs51193427 SNP Detail

Summary

• ID
  rs51193427
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146015445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGTAACT TTAATAGATC
  GAATATTAAT CTTTAAAAGC ATTGTTAAGC TCTAAATAGT TTTTTACGGC CCTCAGAAAA
  ACCATCTAAG GGTACCAAAG AGCATACTTT GAACAGAAGC AACATAAAAA CAAAGCAAGC
  TTTCCATGCC TTCCATCCTG AAGGATCAGG GCCAGCGGAG ATGGTCAGCG GATATAAATC
  S
  GTGTGAGAGT GTGAGGTCCA GCTGTGCTGT AGCAGAAGCT TGGGAGCCTC ACCGGTGAAT
  GCCTGTATCC TGCGGGAAAG CATCCTTCCC CATGTGGGAG AGGTGGAGTG CAAAGGCCTA
  CAGTGGCTAA GCCATTGATG ATGGGCACTC TATCAAACTT GGCTCCCTTC CTCTTTGTCT
  TTCCTCCCCA ACCCGTGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136042981	ENSMUSSNP2687043	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss321009821	CHEV_3_145972654	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51193427					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146015445 () rs orientation: forward

Symbol	Name	Function Class
Rr586996	regulatory region 586996	1238 bp proximal