rs51194148 SNP Detail

Summary

• ID
  rs51194148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:53872348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGCATAC CACCCCTGGC
  CCTCGGGGCA TTCTCCACTT TTCTCTGAAG GTTATATACA TCTCCAAACC ACCCTTTTGT
  ACAGCTACTT ACACCCCACC TAGGCTCCAA GTGCAGAACA GGCTTACTTT CTGCACTCTA
  AAAATGAGCC AGTTTTTCTC TTCCTTCTGT TTACCTTTGG GCAGCTGCCA GAATTTACAG
  Y
  TCACTATAAT ACAATGGGCC TCAATCTTCC TTCTGAATCC ACTTAAAAAT TCTTAGATAA
  AGGACACTAA GAACATATAA GAGAACCTGG ATTTCCCCAG TAAGTAATGT TTTAATGACA
  TTATTGTAGA AACTTGAAGA ACAAACAACC AGAGGACAGT GATGTAAAAC CTGAGCTTTT
  TCGGGAGGCA GAGGCAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62790773	NES17344595	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51194148					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62790773	NES17344595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:53872348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9316	CpG island 9316	1422 bp proximal
Kat2b	K(lysine) acetyltransferase 2B	1541 bp upstream
Rr339992	regulatory region 339992	652 bp proximal
Tssr5169	transcription start site region 5169	579 bp upstream
Tssr145221	transcription start site region 145221	1416 bp upstream
Tssr145222	transcription start site region 145222	1656 bp upstream
Tssr145223	transcription start site region 145223	1939 bp upstream
Tssr145224	transcription start site region 145224	1968 bp upstream
Tssr145225	transcription start site region 145225	1994 bp upstream